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Department of

Pharmacology & Systems Physiology 

Photo of  Hamid Eghbalnia, PhD

Hamid Eghbalnia, PhD

Volunteer Assistant Professor

Contact Information
  • Office 4260 Medical Sciences Building
  • Laboratory 4872 CARE/Crawley Building
  • 231 Albert Sabin Way
  • Cincinnati, Ohio 45267-0576
  • Office (513)558-6156
  • Fax (513)558-5738
  • Email hamid.eghbalnia@uc.edu

Peer Reviewed Publications

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Bahrami, Arash; Clos, Lawrence J; Markley, John L; Butcher, Samuel E; Eghbalnia, Hamid R 2012. RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts. Journal of biomolecular NMR, 52 4, 289-302

Bahrami, Arash; Tonelli, Marco; Sahu, Sarata C; Singarapu, Kiran K; Eghbalnia, Hamid R; Markley, John L 2012. Robust, integrated computational control of NMR experiments to achieve optimal assignment by ADAPT-NMR. PloS one, 7 3, e33173

Nielsen, Jakob T; Eghbalnia, Hamid R; Nielsen, Niels Chr 2012. Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field. Progress in nuclear magnetic resonance spectroscopy, 60 , 1-28

Bahrami, Arash; Assadi, Amir H; Markley, John L; Eghbalnia, Hamid R 2009. Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy. PLoS computational biology, 5 3, e1000307

Butz, Daniel E; Cook, Mark E; Eghbalnia, Hamid R; Assadi-Porter, Fariba; Porter, Warren P 2009. Changes in the natural abundance of 13CO2/12CO2 in breath due to lipopolysacchride-induced acute phase response. Rapid communications in mass spectrometry : RCM, 23 23, 3729-35

Lee, Woonghee; Westler, William M; Bahrami, Arash; Eghbalnia, Hamid R; Markley, John L 2009. PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy. Bioinformatics (Oxford, England), 25 16, 2085-7

Cui, Qiu; Lewis, Ian A; Hegeman, Adrian D; Anderson, Mark E; Li, Jing; Schulte, Christopher F; Westler, William M; Eghbalnia, Hamid R; Sussman, Michael R; Markley, John L 2008. Metabolite identification via the Madison Metabolomics Consortium Database. Nature biotechnology, 26 2, 162-4

Cornilescu, Gabriel; Bahrami, Arash; Tonelli, Marco; Markley, John L; Eghbalnia, Hamid R 2007. HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections. Journal of biomolecular NMR, 38 4, 341-51

Hegeman, Adrian D; Schulte, Christopher F; Cui, Qiu; Lewis, Ian A; Huttlin, Edward L; Eghbalnia, Hamid; Harms, Amy C; Ulrich, Eldon L; Markley, John L; Sussman, Michael R 2007. Stable isotope assisted assignment of elemental compositions for metabolomics. Analytical chemistry, 79 18, 6912-21

Markley, John L; Anderson, Mark E; Cui, Qiu; Eghbalnia, Hamid R; Lewis, Ian A; Hegeman, Adrian D; Li, Jing; Schulte, Christopher F; Sussman, Michael R; Westler, William M; Ulrich, Eldon L; Zolnai, Zsolt 2007. New bioinformatics resources for metabolomics. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, , 157-68

Wang, Liya; Eghbalnia, Hamid R; Markley, John L 2007. Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins. Journal of biomolecular NMR, 39 3, 247-57

Wang, Liya; Eghbalnia, Hamid R; Markley, John L 2006. Probabilistic approach to determining unbiased random-coil carbon-13 chemical shift values from the protein chemical shift database. Journal of biomolecular NMR, 35 3, 155-65

Eghbalnia, Hamid R; Bahrami, Arash; Tonelli, Marco; Hallenga, Klaas; Markley, John L 2005. High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection. Journal of the American Chemical Society, 127 36, 12528-36

Eghbalnia, Hamid R; Bahrami, Arash; Wang, Liya; Assadi, Amir; Markley, John L 2005. Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO). Journal of biomolecular NMR, 32 3, 219-33

Eghbalnia, Hamid R; Wang, Liya; Bahrami, Arash; Assadi, Amir; Markley, John L 2005. Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements. Journal of biomolecular NMR, 32 1, 71-81

Wang, Liya; Eghbalnia, Hamid R; Bahrami, Arash; Markley, John L 2005. Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications. Journal of biomolecular NMR, 32 1, 13-22

Published Abstracts

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Markley J.L.; Bahrami, A.; Eghbalnia, H.R.; Ulrich, E.L.; Westler, W.M.; & Volkman, B.F. 2009. Macromolecular Structure Determination by NMR Spectroscopy. Structural Bioinformatics, 2nd Ed. March 2009 ,


. Changes in the Natural Abundance of 13C/12C in breath as a Biomarker of acute phase response to Endotoxemia Communications in Mass Spectroscopy. , ,


. Elucidating the biomarker profile of endotoxic shock by quantification of small molecule metabolites in serum using NMR spectroscopy. JACS, ,


. Finding probabilities for backbone conformations using torsion angle region analysis. PLoS, ,


. Scanning for Remote Structure Templates using Multiscale Probabilistic Modeling. (Tentative title) PLoS, ,